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update kernel tutorial
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Homer Strong
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372 changed files with 92313 additions and 121 deletions
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doc/_build/html/_modules/GPy.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<html xmlns="http://www.w3.org/1999/xhtml">
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<head>
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<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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<title>GPy — GPy documentation</title>
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<link rel="stylesheet" href="../_static//default.css" type="text/css" />
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<link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
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<script type="text/javascript">
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FILE_SUFFIX: '.html',
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<script type="text/javascript" src="../_static/doctools.js"></script>
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<link rel="top" title="GPy documentation" href="../index.html" />
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<link rel="up" title="Module code" href="index.html" />
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</head>
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<body role="document">
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<div class="related" role="navigation" aria-label="related navigation">
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<h3>Navigation</h3>
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<ul>
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<li class="right" style="margin-right: 10px">
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<a href="../genindex.html" title="General Index"
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accesskey="I">index</a></li>
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<li class="right" >
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<a href="../py-modindex.html" title="Python Module Index"
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>modules</a> |</li>
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<li class="nav-item nav-item-0"><a href="../index.html">GPy documentation</a> »</li>
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<li class="nav-item nav-item-1"><a href="index.html" accesskey="U">Module code</a> »</li>
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</ul>
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</div>
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<div class="document">
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<div class="documentwrapper">
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<div class="bodywrapper">
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<div class="body" role="main">
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<h1>Source code for GPy</h1><div class="highlight"><pre>
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<span class="c"># Copyright (c) 2012, GPy authors (see AUTHORS.txt).</span>
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<span class="c"># Licensed under the BSD 3-clause license (see LICENSE.txt)</span>
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<span class="kn">import</span> <span class="nn">warnings</span>
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<span class="n">warnings</span><span class="o">.</span><span class="n">filterwarnings</span><span class="p">(</span><span class="s">"ignore"</span><span class="p">,</span> <span class="n">category</span><span class="o">=</span><span class="ne">DeprecationWarning</span><span class="p">)</span>
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<span class="kn">import</span> <span class="nn">core</span>
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<span class="kn">from</span> <span class="nn">core.parameterization</span> <span class="kn">import</span> <span class="n">transformations</span><span class="p">,</span> <span class="n">priors</span>
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<span class="n">constraints</span> <span class="o">=</span> <span class="n">transformations</span>
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<span class="kn">import</span> <span class="nn">models</span>
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<span class="kn">import</span> <span class="nn">mappings</span>
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<span class="kn">import</span> <span class="nn">inference</span>
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<span class="kn">import</span> <span class="nn">util</span>
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<span class="kn">import</span> <span class="nn">examples</span>
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<span class="kn">import</span> <span class="nn">likelihoods</span>
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<span class="kn">import</span> <span class="nn">testing</span>
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<span class="kn">from</span> <span class="nn">numpy.testing</span> <span class="kn">import</span> <span class="n">Tester</span>
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<span class="kn">import</span> <span class="nn">kern</span>
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<span class="kn">import</span> <span class="nn">plotting</span>
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<span class="c"># Direct imports for convenience:</span>
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<span class="kn">from</span> <span class="nn">core</span> <span class="kn">import</span> <span class="n">Model</span>
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<span class="kn">from</span> <span class="nn">core.parameterization</span> <span class="kn">import</span> <span class="n">Param</span><span class="p">,</span> <span class="n">Parameterized</span><span class="p">,</span> <span class="n">ObsAr</span>
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<span class="c">#@nottest</span>
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<span class="k">try</span><span class="p">:</span>
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<span class="c">#Get rid of nose dependency by only ignoring if you have nose installed</span>
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<span class="kn">from</span> <span class="nn">nose.tools</span> <span class="kn">import</span> <span class="n">nottest</span>
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<span class="nd">@nottest</span>
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<span class="k">def</span> <span class="nf">tests</span><span class="p">():</span>
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<span class="n">Tester</span><span class="p">(</span><span class="n">testing</span><span class="p">)</span><span class="o">.</span><span class="n">test</span><span class="p">(</span><span class="n">verbose</span><span class="o">=</span><span class="mi">10</span><span class="p">)</span>
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<span class="k">except</span><span class="p">:</span>
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<div class="viewcode-block" id="tests"><a class="viewcode-back" href="../GPy.html#GPy.tests">[docs]</a> <span class="k">def</span> <span class="nf">tests</span><span class="p">():</span>
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<span class="n">Tester</span><span class="p">(</span><span class="n">testing</span><span class="p">)</span><span class="o">.</span><span class="n">test</span><span class="p">(</span><span class="n">verbose</span><span class="o">=</span><span class="mi">10</span><span class="p">)</span>
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</div>
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<div class="viewcode-block" id="load"><a class="viewcode-back" href="../GPy.html#GPy.load">[docs]</a><span class="k">def</span> <span class="nf">load</span><span class="p">(</span><span class="n">file_path</span><span class="p">):</span>
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<span class="sd">"""</span>
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<span class="sd"> Load a previously pickled model, using `m.pickle('path/to/file.pickle)'</span>
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<span class="sd"> :param file_name: path/to/file.pickle</span>
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<span class="sd"> """</span>
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<span class="kn">import</span> <span class="nn">cPickle</span> <span class="kn">as</span> <span class="nn">pickle</span>
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<span class="k">try</span><span class="p">:</span>
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<span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="s">'rb'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
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<span class="n">m</span> <span class="o">=</span> <span class="n">pickle</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
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<span class="k">except</span><span class="p">:</span>
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<span class="kn">import</span> <span class="nn">pickle</span> <span class="kn">as</span> <span class="nn">pickle</span>
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<span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">file_path</span><span class="p">,</span> <span class="s">'rb'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
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<span class="n">m</span> <span class="o">=</span> <span class="n">pickle</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
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<span class="k">return</span> <span class="n">m</span></div>
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</pre></div>
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</div>
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</div>
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</div>
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<div class="sphinxsidebar" role="navigation" aria-label="main navigation">
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<div class="sphinxsidebarwrapper">
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<div id="searchbox" style="display: none" role="search">
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<h3>Quick search</h3>
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<form class="search" action="../search.html" method="get">
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<input type="text" name="q" />
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<input type="submit" value="Go" />
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<input type="hidden" name="check_keywords" value="yes" />
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<input type="hidden" name="area" value="default" />
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</form>
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<p class="searchtip" style="font-size: 90%">
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Enter search terms or a module, class or function name.
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</p>
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</div>
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<script type="text/javascript">$('#searchbox').show(0);</script>
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</div>
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<div class="clearer"></div>
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</div>
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<div class="related" role="navigation" aria-label="related navigation">
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<h3>Navigation</h3>
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<ul>
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<li class="right" style="margin-right: 10px">
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<a href="../genindex.html" title="General Index"
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>index</a></li>
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<li class="right" >
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<a href="../py-modindex.html" title="Python Module Index"
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>modules</a> |</li>
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<li class="nav-item nav-item-0"><a href="../index.html">GPy documentation</a> »</li>
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<li class="nav-item nav-item-1"><a href="index.html" >Module code</a> »</li>
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</ul>
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</div>
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<div class="footer" role="contentinfo">
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© Copyright 2013, Author.
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Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.3.1.
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