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parameter adding and removing now fully functional according to tests, including fixes

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This commit is contained in:
Max Zwiessele 2014-02-13 16:44:45 +00:00
parent f71af38505
commit 13212abd0b
4 changed files with 123 additions and 8 deletions
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13
GPy/core/parameterization/index_operations.py
View file

@ -57,6 +57,7 @@ class ParameterIndexOperations(object):
You can give an offset to set an offset for the given indices in the
index array, for multi-param handling.
'''
_offset = 0
def __init__(self, constraints=None):
self._properties = IntArrayDict()
if constraints is not None:
@ -120,6 +121,14 @@ class ParameterIndexOperations(object):
return removed.astype(int)
return numpy.array([]).astype(int)
def update(self, parameter_index_view, offset=0):
for i, v in parameter_index_view.iteritems():
self.add(i, v+offset)
def copy(self):
return ParameterIndexOperations(dict(self.iteritems()))
def __getitem__(self, prop):
return self._properties[prop]
@ -223,9 +232,9 @@ class ParameterIndexOperationsView(object):
import pprint
return pprint.pformat(dict(self.iteritems()))
def update(self, parameter_index_view):
def update(self, parameter_index_view, offset=0):
for i, v in parameter_index_view.iteritems():
self.add(i, v)
self.add(i, v+offset)
def copy(self):

11
GPy/core/parameterization/parameter_core.py
View file

@ -72,6 +72,13 @@ class Parentable(object):
def has_parent(self):
return self._direct_parent_ is not None
def _notify_parent_change(self):
for p in self._parameters_:
p._parent_changed(self)
def _parent_changed(self):
raise NotImplementedError, "shouldnt happen, Parentable objects need to be able to change their parent"
@property
def _highest_parent_(self):
if self._direct_parent_ is None:
@ -182,11 +189,9 @@ class Constrainable(Nameable, Indexable, Parameterizable):
# Constrain operations -> done
#===========================================================================
def _parent_changed(self, parent):
c = self.constraints
from index_operations import ParameterIndexOperationsView
self.constraints = ParameterIndexOperationsView(parent.constraints, parent._offset_for(self), self.size)
self.constraints.update(c)
del c
self._fixes_ = None
for p in self._parameters_:
p._parent_changed(parent)

14
GPy/core/parameterization/parameterized.py
View file

@ -87,17 +87,20 @@ class Parameterized(Constrainable, Pickleable, Observable, Gradcheckable):
elif param not in self._parameters_:
# make sure the size is set
if index is None:
self.constraints.update(param.constraints, self.size)
self._parameters_.append(param)
else:
start = sum(p.size for p in self._parameters_[:index])
self.constraints.shift(start, param.size)
self.constraints.update(param.constraints, start)
self._parameters_.insert(index, param)
self.size += param.size
else:
raise RuntimeError, """Parameter exists already added and no copy made"""
self._connect_parameters()
for p in self._parameters_:
p._parent_changed(self)
self._notify_parent_change()
self._connect_fixes()
def add_parameters(self, *parameters):
"""
@ -120,7 +123,13 @@ class Parameterized(Constrainable, Pickleable, Observable, Gradcheckable):
param._direct_parent_ = None
param._parent_index_ = None
param._connect_fixes()
param._notify_parent_change()
pname = adjust_name_for_printing(param.name)
if pname in self._added_names_:
del self.__dict__[pname]
self._connect_parameters()
#self._notify_parent_change()
self._connect_fixes()
def _connect_parameters(self):
# connect parameterlist to this parameterized object
@ -149,7 +158,6 @@ class Parameterized(Constrainable, Pickleable, Observable, Gradcheckable):
elif not (pname in not_unique):
self.__dict__[pname] = p
self._added_names_.add(pname)
self._connect_fixes()
#===========================================================================
# Pickling operations

93
GPy/testing/parameterized_tests.py Normal file
View file

@ -0,0 +1,93 @@
'''
Created on Feb 13, 2014
@author: maxzwiessele
'''
import unittest
import GPy
import numpy as np
class Test(unittest.TestCase):
def setUp(self):
self.rbf = GPy.kern.rbf(1)
self.white = GPy.kern.white(1)
from GPy.core.parameterization import Param
from GPy.core.parameterization.transformations import Logistic
self.param = Param('param', np.random.rand(25,2), Logistic(0, 1))
self.test1 = GPy.core.Parameterized("test model")
self.test1.add_parameter(self.white)
self.test1.add_parameter(self.rbf, 0)
self.test1.add_parameter(self.param)
def test_add_parameter(self):
self.assertEquals(self.rbf._parent_index_, 0)
self.assertEquals(self.white._parent_index_, 1)
pass
def test_fixes(self):
self.white.fix(warning=False)
self.test1.remove_parameter(self.test1.param)
self.assertTrue(self.test1._has_fixes())
from GPy.core.parameterization.transformations import FIXED, UNFIXED
self.assertListEqual(self.test1._fixes_.tolist(),[UNFIXED,UNFIXED,FIXED])
self.test1.add_parameter(self.white, 0)
self.assertListEqual(self.test1._fixes_.tolist(),[FIXED,UNFIXED,UNFIXED])
def test_remove_parameter(self):
from GPy.core.parameterization.transformations import FIXED, UNFIXED, __fixed__
self.white.fix()
self.test1.remove_parameter(self.white)
self.assertIs(self.test1._fixes_,None)
self.assertListEqual(self.white._fixes_.tolist(), [FIXED])
self.assertIs(self.white.constraints,self.white.white.constraints._param_index_ops)
self.assertEquals(self.white.white.constraints._offset, 0)
self.assertIs(self.test1.constraints, self.rbf.constraints._param_index_ops)
self.assertIs(self.test1.constraints, self.param.constraints._param_index_ops)
self.test1.add_parameter(self.white, 0)
self.assertIs(self.test1.constraints, self.white.constraints._param_index_ops)
self.assertIs(self.test1.constraints, self.rbf.constraints._param_index_ops)
self.assertIs(self.test1.constraints, self.param.constraints._param_index_ops)
self.assertListEqual(self.test1.constraints[__fixed__].tolist(), [0])
self.assertIs(self.white._fixes_,None)
self.assertListEqual(self.test1._fixes_.tolist(),[FIXED] + [UNFIXED] * 52)
self.test1.remove_parameter(self.white)
self.assertIs(self.test1._fixes_,None)
self.assertListEqual(self.white._fixes_.tolist(), [FIXED])
self.assertIs(self.white.constraints,self.white.white.constraints._param_index_ops)
self.assertIs(self.test1.constraints, self.rbf.constraints._param_index_ops)
self.assertIs(self.test1.constraints, self.param.constraints._param_index_ops)
def test_add_parameter_already_in_hirarchy(self):
self.test1.add_parameter(self.white._parameters_[0])
def test_default_constraints(self):
self.assertIs(self.rbf.rbf.variance.constraints._param_index_ops, self.rbf.constraints._param_index_ops)
self.assertIs(self.test1.constraints, self.rbf.constraints._param_index_ops)
self.assertListEqual(self.rbf.constraints.indices()[0].tolist(), range(2))
from GPy.core.parameterization.transformations import Logexp
kern = self.rbf+self.white
self.assertListEqual(kern.constraints[Logexp()].tolist(), range(3))
def test_constraints(self):
self.rbf.constrain(GPy.transformations.Square(), False)
self.assertListEqual(self.test1.constraints[GPy.transformations.Square()].tolist(), range(2))
self.assertListEqual(self.test1.constraints[GPy.transformations.Logexp()].tolist(), [2])
self.test1.remove_parameter(self.rbf)
self.assertListEqual(self.test1.constraints[GPy.transformations.Square()].tolist(), [])
def test_constraints_views(self):
self.assertEqual(self.white.constraints._offset, 2)
self.assertEqual(self.rbf.constraints._offset, 0)
self.assertEqual(self.param.constraints._offset, 3)
if __name__ == "__main__":
#import sys;sys.argv = ['', 'Test.test_add_parameter']
unittest.main()