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update kernel tutorial
2015-07-19 14:30:27 -07:00
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<div class="section" id="gpy-plotting-matplot-dep-package">
<h1>GPy.plotting.matplot_dep package<a class="headerlink" href="#gpy-plotting-matplot-dep-package" title="Permalink to this headline"></a></h1>
<div class="section" id="subpackages">
<h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to this headline"></a></h2>
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<li class="toctree-l1"><a class="reference internal" href="GPy.plotting.matplot_dep.latent_space_visualizations.html">GPy.plotting.matplot_dep.latent_space_visualizations package</a><ul>
<li class="toctree-l2"><a class="reference internal" href="GPy.plotting.matplot_dep.latent_space_visualizations.html#subpackages">Subpackages</a><ul>
<li class="toctree-l3"><a class="reference internal" href="GPy.plotting.matplot_dep.latent_space_visualizations.controllers.html">GPy.plotting.matplot_dep.latent_space_visualizations.controllers package</a><ul>
<li class="toctree-l4"><a class="reference internal" href="GPy.plotting.matplot_dep.latent_space_visualizations.controllers.html#submodules">Submodules</a></li>
<li class="toctree-l4"><a class="reference internal" href="GPy.plotting.matplot_dep.latent_space_visualizations.controllers.html#module-GPy.plotting.matplot_dep.latent_space_visualizations.controllers.axis_event_controller">GPy.plotting.matplot_dep.latent_space_visualizations.controllers.axis_event_controller module</a></li>
<li class="toctree-l4"><a class="reference internal" href="GPy.plotting.matplot_dep.latent_space_visualizations.controllers.html#module-GPy.plotting.matplot_dep.latent_space_visualizations.controllers.imshow_controller">GPy.plotting.matplot_dep.latent_space_visualizations.controllers.imshow_controller module</a></li>
<li class="toctree-l4"><a class="reference internal" href="GPy.plotting.matplot_dep.latent_space_visualizations.controllers.html#module-GPy.plotting.matplot_dep.latent_space_visualizations.controllers">Module contents</a></li>
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<li class="toctree-l2"><a class="reference internal" href="GPy.plotting.matplot_dep.latent_space_visualizations.html#module-GPy.plotting.matplot_dep.latent_space_visualizations">Module contents</a></li>
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<div class="section" id="submodules">
<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline"></a></h2>
</div>
<div class="section" id="module-GPy.plotting.matplot_dep.Tango">
<span id="gpy-plotting-matplot-dep-tango-module"></span><h2>GPy.plotting.matplot_dep.Tango module<a class="headerlink" href="#module-GPy.plotting.matplot_dep.Tango" title="Permalink to this headline"></a></h2>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.Tango.currentDark">
<code class="descclassname">GPy.plotting.matplot_dep.Tango.</code><code class="descname">currentDark</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/Tango.html#currentDark"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.Tango.currentDark" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.Tango.currentLight">
<code class="descclassname">GPy.plotting.matplot_dep.Tango.</code><code class="descname">currentLight</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/Tango.html#currentLight"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.Tango.currentLight" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.Tango.currentMedium">
<code class="descclassname">GPy.plotting.matplot_dep.Tango.</code><code class="descname">currentMedium</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/Tango.html#currentMedium"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.Tango.currentMedium" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.Tango.fewerXticks">
<code class="descclassname">GPy.plotting.matplot_dep.Tango.</code><code class="descname">fewerXticks</code><span class="sig-paren">(</span><em>ax=None</em>, <em>divideby=2</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/Tango.html#fewerXticks"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.Tango.fewerXticks" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.Tango.hex2rgb">
<code class="descclassname">GPy.plotting.matplot_dep.Tango.</code><code class="descname">hex2rgb</code><span class="sig-paren">(</span><em>hexcolor</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/Tango.html#hex2rgb"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.Tango.hex2rgb" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.Tango.nextDark">
<code class="descclassname">GPy.plotting.matplot_dep.Tango.</code><code class="descname">nextDark</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/Tango.html#nextDark"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.Tango.nextDark" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.Tango.nextLight">
<code class="descclassname">GPy.plotting.matplot_dep.Tango.</code><code class="descname">nextLight</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/Tango.html#nextLight"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.Tango.nextLight" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.Tango.nextMedium">
<code class="descclassname">GPy.plotting.matplot_dep.Tango.</code><code class="descname">nextMedium</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/Tango.html#nextMedium"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.Tango.nextMedium" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.Tango.removeRightTicks">
<code class="descclassname">GPy.plotting.matplot_dep.Tango.</code><code class="descname">removeRightTicks</code><span class="sig-paren">(</span><em>ax=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/Tango.html#removeRightTicks"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.Tango.removeRightTicks" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.Tango.removeUpperTicks">
<code class="descclassname">GPy.plotting.matplot_dep.Tango.</code><code class="descname">removeUpperTicks</code><span class="sig-paren">(</span><em>ax=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/Tango.html#removeUpperTicks"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.Tango.removeUpperTicks" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.Tango.reset">
<code class="descclassname">GPy.plotting.matplot_dep.Tango.</code><code class="descname">reset</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/Tango.html#reset"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.Tango.reset" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.Tango.setDarkFigures">
<code class="descclassname">GPy.plotting.matplot_dep.Tango.</code><code class="descname">setDarkFigures</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/Tango.html#setDarkFigures"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.Tango.setDarkFigures" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.Tango.setLightFigures">
<code class="descclassname">GPy.plotting.matplot_dep.Tango.</code><code class="descname">setLightFigures</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/Tango.html#setLightFigures"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.Tango.setLightFigures" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</div>
<div class="section" id="module-GPy.plotting.matplot_dep.base_plots">
<span id="gpy-plotting-matplot-dep-base-plots-module"></span><h2>GPy.plotting.matplot_dep.base_plots module<a class="headerlink" href="#module-GPy.plotting.matplot_dep.base_plots" title="Permalink to this headline"></a></h2>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.base_plots.align_subplot_array">
<code class="descclassname">GPy.plotting.matplot_dep.base_plots.</code><code class="descname">align_subplot_array</code><span class="sig-paren">(</span><em>axes</em>, <em>xlim=None</em>, <em>ylim=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/base_plots.html#align_subplot_array"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.base_plots.align_subplot_array" title="Permalink to this definition"></a></dt>
<dd><p>Make all of the axes in the array hae the same limits, turn off unnecessary ticks
use pb.subplots() to get an array of axes</p>
</dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.base_plots.align_subplots">
<code class="descclassname">GPy.plotting.matplot_dep.base_plots.</code><code class="descname">align_subplots</code><span class="sig-paren">(</span><em>N</em>, <em>M</em>, <em>xlim=None</em>, <em>ylim=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/base_plots.html#align_subplots"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.base_plots.align_subplots" title="Permalink to this definition"></a></dt>
<dd><p>make all of the subplots have the same limits, turn off unnecessary ticks</p>
</dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.base_plots.ax_default">
<code class="descclassname">GPy.plotting.matplot_dep.base_plots.</code><code class="descname">ax_default</code><span class="sig-paren">(</span><em>fignum</em>, <em>ax</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/base_plots.html#ax_default"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.base_plots.ax_default" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.base_plots.fewerXticks">
<code class="descclassname">GPy.plotting.matplot_dep.base_plots.</code><code class="descname">fewerXticks</code><span class="sig-paren">(</span><em>ax=None</em>, <em>divideby=2</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/base_plots.html#fewerXticks"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.base_plots.fewerXticks" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.base_plots.gpplot">
<code class="descclassname">GPy.plotting.matplot_dep.base_plots.</code><code class="descname">gpplot</code><span class="sig-paren">(</span><em>x</em>, <em>mu</em>, <em>lower</em>, <em>upper</em>, <em>edgecol='#204a87'</em>, <em>fillcol='#729fcf'</em>, <em>ax=None</em>, <em>fignum=None</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/base_plots.html#gpplot"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.base_plots.gpplot" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.base_plots.meanplot">
<code class="descclassname">GPy.plotting.matplot_dep.base_plots.</code><code class="descname">meanplot</code><span class="sig-paren">(</span><em>x</em>, <em>mu</em>, <em>color='#204a87'</em>, <em>ax=None</em>, <em>fignum=None</em>, <em>linewidth=2</em>, <em>**kw</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/base_plots.html#meanplot"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.base_plots.meanplot" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.base_plots.removeRightTicks">
<code class="descclassname">GPy.plotting.matplot_dep.base_plots.</code><code class="descname">removeRightTicks</code><span class="sig-paren">(</span><em>ax=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/base_plots.html#removeRightTicks"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.base_plots.removeRightTicks" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.base_plots.removeUpperTicks">
<code class="descclassname">GPy.plotting.matplot_dep.base_plots.</code><code class="descname">removeUpperTicks</code><span class="sig-paren">(</span><em>ax=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/base_plots.html#removeUpperTicks"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.base_plots.removeUpperTicks" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.base_plots.x_frame1D">
<code class="descclassname">GPy.plotting.matplot_dep.base_plots.</code><code class="descname">x_frame1D</code><span class="sig-paren">(</span><em>X</em>, <em>plot_limits=None</em>, <em>resolution=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/base_plots.html#x_frame1D"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.base_plots.x_frame1D" title="Permalink to this definition"></a></dt>
<dd><p>Internal helper function for making plots, returns a set of input values to plot as well as lower and upper limits</p>
</dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.base_plots.x_frame2D">
<code class="descclassname">GPy.plotting.matplot_dep.base_plots.</code><code class="descname">x_frame2D</code><span class="sig-paren">(</span><em>X</em>, <em>plot_limits=None</em>, <em>resolution=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/base_plots.html#x_frame2D"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.base_plots.x_frame2D" title="Permalink to this definition"></a></dt>
<dd><p>Internal helper function for making plots, returns a set of input values to plot as well as lower and upper limits</p>
</dd></dl>
</div>
<div class="section" id="module-GPy.plotting.matplot_dep.dim_reduction_plots">
<span id="gpy-plotting-matplot-dep-dim-reduction-plots-module"></span><h2>GPy.plotting.matplot_dep.dim_reduction_plots module<a class="headerlink" href="#module-GPy.plotting.matplot_dep.dim_reduction_plots" title="Permalink to this headline"></a></h2>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.dim_reduction_plots.most_significant_input_dimensions">
<code class="descclassname">GPy.plotting.matplot_dep.dim_reduction_plots.</code><code class="descname">most_significant_input_dimensions</code><span class="sig-paren">(</span><em>model</em>, <em>which_indices</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/dim_reduction_plots.html#most_significant_input_dimensions"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.dim_reduction_plots.most_significant_input_dimensions" title="Permalink to this definition"></a></dt>
<dd><p>Determine which dimensions should be plotted</p>
</dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.dim_reduction_plots.plot_latent">
<code class="descclassname">GPy.plotting.matplot_dep.dim_reduction_plots.</code><code class="descname">plot_latent</code><span class="sig-paren">(</span><em>model</em>, <em>labels=None</em>, <em>which_indices=None</em>, <em>resolution=50</em>, <em>ax=None</em>, <em>marker='o'</em>, <em>s=40</em>, <em>fignum=None</em>, <em>plot_inducing=False</em>, <em>legend=True</em>, <em>plot_limits=None</em>, <em>aspect='auto'</em>, <em>updates=False</em>, <em>predict_kwargs={}</em>, <em>imshow_kwargs={}</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/dim_reduction_plots.html#plot_latent"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.dim_reduction_plots.plot_latent" title="Permalink to this definition"></a></dt>
<dd><table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
<li><strong>labels</strong> &#8211; a np.array of size model.num_data containing labels for the points (can be number, strings, etc)</li>
<li><strong>resolution</strong> &#8211; the resolution of the grid on which to evaluate the predictive variance</li>
</ul>
</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.dim_reduction_plots.plot_magnification">
<code class="descclassname">GPy.plotting.matplot_dep.dim_reduction_plots.</code><code class="descname">plot_magnification</code><span class="sig-paren">(</span><em>model</em>, <em>labels=None</em>, <em>which_indices=None</em>, <em>resolution=60</em>, <em>ax=None</em>, <em>marker='o'</em>, <em>s=40</em>, <em>fignum=None</em>, <em>plot_inducing=False</em>, <em>legend=True</em>, <em>aspect='auto'</em>, <em>updates=False</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/dim_reduction_plots.html#plot_magnification"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.dim_reduction_plots.plot_magnification" title="Permalink to this definition"></a></dt>
<dd><table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
<li><strong>labels</strong> &#8211; a np.array of size model.num_data containing labels for the points (can be number, strings, etc)</li>
<li><strong>resolution</strong> &#8211; the resolution of the grid on which to evaluate the predictive variance</li>
</ul>
</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.dim_reduction_plots.plot_steepest_gradient_map">
<code class="descclassname">GPy.plotting.matplot_dep.dim_reduction_plots.</code><code class="descname">plot_steepest_gradient_map</code><span class="sig-paren">(</span><em>model</em>, <em>fignum=None</em>, <em>ax=None</em>, <em>which_indices=None</em>, <em>labels=None</em>, <em>data_labels=None</em>, <em>data_marker='o'</em>, <em>data_s=40</em>, <em>resolution=20</em>, <em>aspect='auto'</em>, <em>updates=False</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/dim_reduction_plots.html#plot_steepest_gradient_map"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.dim_reduction_plots.plot_steepest_gradient_map" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</div>
<div class="section" id="module-GPy.plotting.matplot_dep.img_plots">
<span id="gpy-plotting-matplot-dep-img-plots-module"></span><h2>GPy.plotting.matplot_dep.img_plots module<a class="headerlink" href="#module-GPy.plotting.matplot_dep.img_plots" title="Permalink to this headline"></a></h2>
<p>The module contains the tools for ploting 2D image visualizations</p>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.img_plots.plot_2D_images">
<code class="descclassname">GPy.plotting.matplot_dep.img_plots.</code><code class="descname">plot_2D_images</code><span class="sig-paren">(</span><em>figure</em>, <em>arr</em>, <em>symmetric=False</em>, <em>pad=None</em>, <em>zoom=None</em>, <em>mode=None</em>, <em>interpolation='nearest'</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/img_plots.html#plot_2D_images"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.img_plots.plot_2D_images" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</div>
<div class="section" id="module-GPy.plotting.matplot_dep.inference_plots">
<span id="gpy-plotting-matplot-dep-inference-plots-module"></span><h2>GPy.plotting.matplot_dep.inference_plots module<a class="headerlink" href="#module-GPy.plotting.matplot_dep.inference_plots" title="Permalink to this headline"></a></h2>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.inference_plots.plot_optimizer">
<code class="descclassname">GPy.plotting.matplot_dep.inference_plots.</code><code class="descname">plot_optimizer</code><span class="sig-paren">(</span><em>optimizer</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/inference_plots.html#plot_optimizer"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.inference_plots.plot_optimizer" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.inference_plots.plot_sgd_traces">
<code class="descclassname">GPy.plotting.matplot_dep.inference_plots.</code><code class="descname">plot_sgd_traces</code><span class="sig-paren">(</span><em>optimizer</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/inference_plots.html#plot_sgd_traces"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.inference_plots.plot_sgd_traces" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</div>
<div class="section" id="module-GPy.plotting.matplot_dep.kernel_plots">
<span id="gpy-plotting-matplot-dep-kernel-plots-module"></span><h2>GPy.plotting.matplot_dep.kernel_plots module<a class="headerlink" href="#module-GPy.plotting.matplot_dep.kernel_plots" title="Permalink to this headline"></a></h2>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.kernel_plots.add_bar_labels">
<code class="descclassname">GPy.plotting.matplot_dep.kernel_plots.</code><code class="descname">add_bar_labels</code><span class="sig-paren">(</span><em>fig</em>, <em>ax</em>, <em>bars</em>, <em>bottom=0</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/kernel_plots.html#add_bar_labels"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.kernel_plots.add_bar_labels" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.kernel_plots.plot">
<code class="descclassname">GPy.plotting.matplot_dep.kernel_plots.</code><code class="descname">plot</code><span class="sig-paren">(</span><em>kernel</em>, <em>x=None</em>, <em>fignum=None</em>, <em>ax=None</em>, <em>title=None</em>, <em>plot_limits=None</em>, <em>resolution=None</em>, <em>**mpl_kwargs</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/kernel_plots.html#plot"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.kernel_plots.plot" title="Permalink to this definition"></a></dt>
<dd><p>plot a kernel.
:param x: the value to use for the other kernel argument (kernels are a function of two variables!)
:param fignum: figure number of the plot
:param ax: matplotlib axis to plot on
:param title: the matplotlib title
:param plot_limits: the range over which to plot the kernel
:resolution: the resolution of the lines used in plotting
:mpl_kwargs avalid keyword arguments to pass through to matplotlib (e.g. lw=7)</p>
</dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.kernel_plots.plot_ARD">
<code class="descclassname">GPy.plotting.matplot_dep.kernel_plots.</code><code class="descname">plot_ARD</code><span class="sig-paren">(</span><em>kernel</em>, <em>fignum=None</em>, <em>ax=None</em>, <em>title=''</em>, <em>legend=False</em>, <em>filtering=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/kernel_plots.html#plot_ARD"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.kernel_plots.plot_ARD" title="Permalink to this definition"></a></dt>
<dd><p>If an ARD kernel is present, plot a bar representation using matplotlib</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
<li><strong>fignum</strong> &#8211; figure number of the plot</li>
<li><strong>ax</strong> &#8211; matplotlib axis to plot on</li>
<li><strong>title</strong> &#8211; title of the plot,
pass &#8216;&#8217; to not print a title
pass None for a generic title</li>
<li><strong>filtering</strong> (<em>list of names to use for ARD plot</em>) &#8211; list of names, which to use for plotting ARD parameters.
Only kernels which match names in the list of names in filtering
will be used for plotting.</li>
</ul>
</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.kernel_plots.plot_bars">
<code class="descclassname">GPy.plotting.matplot_dep.kernel_plots.</code><code class="descname">plot_bars</code><span class="sig-paren">(</span><em>fig</em>, <em>ax</em>, <em>x</em>, <em>ard_params</em>, <em>color</em>, <em>name</em>, <em>bottom=0</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/kernel_plots.html#plot_bars"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.kernel_plots.plot_bars" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</div>
<div class="section" id="module-GPy.plotting.matplot_dep.mapping_plots">
<span id="gpy-plotting-matplot-dep-mapping-plots-module"></span><h2>GPy.plotting.matplot_dep.mapping_plots module<a class="headerlink" href="#module-GPy.plotting.matplot_dep.mapping_plots" title="Permalink to this headline"></a></h2>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.mapping_plots.plot_mapping">
<code class="descclassname">GPy.plotting.matplot_dep.mapping_plots.</code><code class="descname">plot_mapping</code><span class="sig-paren">(</span><em>self</em>, <em>plot_limits=None</em>, <em>which_data='all'</em>, <em>which_parts='all'</em>, <em>resolution=None</em>, <em>levels=20</em>, <em>samples=0</em>, <em>fignum=None</em>, <em>ax=None</em>, <em>fixed_inputs=[]</em>, <em>linecol='#204a87'</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/mapping_plots.html#plot_mapping"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.mapping_plots.plot_mapping" title="Permalink to this definition"></a></dt>
<dd><dl class="docutils">
<dt>Plots the mapping associated with the model.</dt>
<dd><ul class="first last simple">
<li>In one dimension, the function is plotted.</li>
<li>In two dimsensions, a contour-plot shows the function</li>
<li>In higher dimensions, we&#8217;ve not implemented this yet !TODO!</li>
</ul>
</dd>
</dl>
<p>Can plot only part of the data and part of the posterior functions
using which_data and which_functions</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
<li><strong>plot_limits</strong> (<em>np.array</em>) &#8211; The limits of the plot. If 1D [xmin,xmax], if 2D [[xmin,ymin],[xmax,ymax]]. Defaluts to data limits</li>
<li><strong>which_data</strong> (<em>&#8216;all&#8217; or a slice object to slice self.X, self.Y</em>) &#8211; which if the training data to plot (default all)</li>
<li><strong>which_parts</strong> (<em>&#8216;all&#8217;, or list of bools</em>) &#8211; which of the kernel functions to plot (additively)</li>
<li><strong>resolution</strong> (<em>int</em>) &#8211; the number of intervals to sample the GP on. Defaults to 200 in 1D and 50 (a 50x50 grid) in 2D</li>
<li><strong>levels</strong> (<em>int</em>) &#8211; number of levels to plot in a contour plot.</li>
<li><strong>samples</strong> (<em>int</em>) &#8211; the number of a posteriori samples to plot</li>
<li><strong>fignum</strong> (<em>figure number</em>) &#8211; figure to plot on.</li>
<li><strong>ax</strong> (<em>axes handle</em>) &#8211; axes to plot on.</li>
<li><strong>fixed_inputs</strong> (<em>a list of tuples</em>) &#8211; a list of tuple [(i,v), (i,v)...], specifying that input index i should be set to value v.</li>
<li><strong>linecol</strong> &#8211; color of line to plot.</li>
<li><strong>levels</strong> &#8211; for 2D plotting, the number of contour levels to use is ax is None, create a new figure</li>
</ul>
</td>
</tr>
</tbody>
</table>
</dd></dl>
</div>
<div class="section" id="module-GPy.plotting.matplot_dep.maps">
<span id="gpy-plotting-matplot-dep-maps-module"></span><h2>GPy.plotting.matplot_dep.maps module<a class="headerlink" href="#module-GPy.plotting.matplot_dep.maps" title="Permalink to this headline"></a></h2>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.maps.apply_bbox">
<code class="descclassname">GPy.plotting.matplot_dep.maps.</code><code class="descname">apply_bbox</code><span class="sig-paren">(</span><em>sf</em>, <em>ax</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/maps.html#apply_bbox"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.maps.apply_bbox" title="Permalink to this definition"></a></dt>
<dd><p>Use bbox as xlim and ylim in ax</p>
</dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.maps.bbox_match">
<code class="descclassname">GPy.plotting.matplot_dep.maps.</code><code class="descname">bbox_match</code><span class="sig-paren">(</span><em>sf</em>, <em>bbox</em>, <em>inside_only=True</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/maps.html#bbox_match"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.maps.bbox_match" title="Permalink to this definition"></a></dt>
<dd><p>Return the geometry and attributes of a shapefile that lie within (or intersect) a bounding box</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
<li><strong>sf</strong> (<em>shapefile object</em>) &#8211; shapefile</li>
<li><strong>bbox</strong> (<em>list of floats [x_min,y_min,x_max,y_max]</em>) &#8211; bounding box</li>
</ul>
</td>
</tr>
<tr class="field-even field"><th class="field-name">Inside_only:</th><td class="field-body"><p class="first last">True if the objects returned are those that lie within the bbox and False if the objects returned are any that intersect the bbox</p>
</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.maps.new_shape_string">
<code class="descclassname">GPy.plotting.matplot_dep.maps.</code><code class="descname">new_shape_string</code><span class="sig-paren">(</span><em>sf</em>, <em>name</em>, <em>regex</em>, <em>field=2</em>, <em>type=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/maps.html#new_shape_string"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.maps.new_shape_string" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.maps.plot">
<code class="descclassname">GPy.plotting.matplot_dep.maps.</code><code class="descname">plot</code><span class="sig-paren">(</span><em>shape_records</em>, <em>facecolor='w'</em>, <em>edgecolor='k'</em>, <em>linewidths=0.5</em>, <em>ax=None</em>, <em>xlims=None</em>, <em>ylims=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/maps.html#plot"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.maps.plot" title="Permalink to this definition"></a></dt>
<dd><p>Plot the geometry of a shapefile</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
<li><strong>shape_records</strong> (<em>ShapeRecord object (output of a shapeRecords() method)</em>) &#8211; geometry and attributes list</li>
<li><strong>facecolor</strong> &#8211; color to be used to fill in polygons</li>
<li><strong>edgecolor</strong> &#8211; color to be used for lines</li>
<li><strong>ax</strong> (<em>axes handle</em>) &#8211; axes to plot on.</li>
</ul>
</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.maps.plot_bbox">
<code class="descclassname">GPy.plotting.matplot_dep.maps.</code><code class="descname">plot_bbox</code><span class="sig-paren">(</span><em>sf</em>, <em>bbox</em>, <em>inside_only=True</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/maps.html#plot_bbox"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.maps.plot_bbox" title="Permalink to this definition"></a></dt>
<dd><p>Plot the geometry of a shapefile within a bbox</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
<li><strong>sf</strong> (<em>shapefile object</em>) &#8211; shapefile</li>
<li><strong>bbox</strong> (<em>list of floats [x_min,y_min,x_max,y_max]</em>) &#8211; bounding box</li>
</ul>
</td>
</tr>
<tr class="field-even field"><th class="field-name">Inside_only:</th><td class="field-body"><p class="first last">True if the objects returned are those that lie within the bbox and False if the objects returned are any that intersect the bbox</p>
</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.maps.plot_string_match">
<code class="descclassname">GPy.plotting.matplot_dep.maps.</code><code class="descname">plot_string_match</code><span class="sig-paren">(</span><em>sf</em>, <em>regex</em>, <em>field</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/maps.html#plot_string_match"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.maps.plot_string_match" title="Permalink to this definition"></a></dt>
<dd><p>Plot the geometry of a shapefile whose fields match a regular expression given</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>sf</strong> (<em>shapefile object</em>) &#8211; shapefile</td>
</tr>
<tr class="field-even field"><th class="field-name">Regex:</th><td class="field-body">regular expression to match</td>
</tr>
<tr class="field-odd field"><th class="field-name">Field:</th><td class="field-body">field number to be matched with the regex</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.maps.string_match">
<code class="descclassname">GPy.plotting.matplot_dep.maps.</code><code class="descname">string_match</code><span class="sig-paren">(</span><em>sf</em>, <em>regex</em>, <em>field=2</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/maps.html#string_match"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.maps.string_match" title="Permalink to this definition"></a></dt>
<dd><p>Return the geometry and attributes of a shapefile whose fields match a regular expression given</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>sf</strong> (<em>shapefile object</em>) &#8211; shapefile</td>
</tr>
<tr class="field-even field"><th class="field-name">Regex:</th><td class="field-body">regular expression to match</td>
</tr>
<tr class="field-odd field"><th class="field-name">Field:</th><td class="field-body">field number to be matched with the regex</td>
</tr>
</tbody>
</table>
</dd></dl>
</div>
<div class="section" id="module-GPy.plotting.matplot_dep.models_plots">
<span id="gpy-plotting-matplot-dep-models-plots-module"></span><h2>GPy.plotting.matplot_dep.models_plots module<a class="headerlink" href="#module-GPy.plotting.matplot_dep.models_plots" title="Permalink to this headline"></a></h2>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.models_plots.plot_fit">
<code class="descclassname">GPy.plotting.matplot_dep.models_plots.</code><code class="descname">plot_fit</code><span class="sig-paren">(</span><em>model</em>, <em>plot_limits=None</em>, <em>which_data_rows='all'</em>, <em>which_data_ycols='all'</em>, <em>fixed_inputs=[]</em>, <em>levels=20</em>, <em>samples=0</em>, <em>fignum=None</em>, <em>ax=None</em>, <em>resolution=None</em>, <em>plot_raw=False</em>, <em>linecol='#204a87'</em>, <em>fillcol='#729fcf'</em>, <em>Y_metadata=None</em>, <em>data_symbol='kx'</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/models_plots.html#plot_fit"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.models_plots.plot_fit" title="Permalink to this definition"></a></dt>
<dd><dl class="docutils">
<dt>Plot the posterior of the GP.</dt>
<dd><ul class="first last simple">
<li>In one dimension, the function is plotted with a shaded region identifying two standard deviations.</li>
<li>In two dimsensions, a contour-plot shows the mean predicted function</li>
<li>In higher dimensions, use fixed_inputs to plot the GP with some of the inputs fixed.</li>
</ul>
</dd>
</dl>
<p>Can plot only part of the data and part of the posterior functions
using which_data_rowsm which_data_ycols.</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
<li><strong>plot_limits</strong> (<em>np.array</em>) &#8211; The limits of the plot. If 1D [xmin,xmax], if 2D [[xmin,ymin],[xmax,ymax]]. Defaluts to data limits</li>
<li><strong>which_data_rows</strong> (<em>&#8216;all&#8217; or a list of integers</em>) &#8211; which of the training data to plot (default all)</li>
<li><strong>which_data_ycols</strong> &#8211; when the data has several columns (independant outputs), only plot these</li>
<li><strong>fixed_inputs</strong> (<em>a list of tuples</em>) &#8211; a list of tuple [(i,v), (i,v)...], specifying that input index i should be set to value v.</li>
<li><strong>resolution</strong> (<em>int</em>) &#8211; the number of intervals to sample the GP on. Defaults to 200 in 1D and 50 (a 50x50 grid) in 2D</li>
<li><strong>levels</strong> (<em>int</em>) &#8211; number of levels to plot in a contour plot.</li>
<li><strong>samples</strong> (<em>int</em>) &#8211; the number of a posteriori samples to plot</li>
<li><strong>fignum</strong> (<em>figure number</em>) &#8211; figure to plot on.</li>
<li><strong>ax</strong> (<em>axes handle</em>) &#8211; axes to plot on.</li>
<li><strong>linecol</strong> &#8211; color of line to plot.</li>
<li><strong>fillcol</strong> &#8211; color of fill</li>
<li><strong>levels</strong> &#8211; for 2D plotting, the number of contour levels to use is ax is None, create a new figure</li>
</ul>
</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.models_plots.plot_fit_f">
<code class="descclassname">GPy.plotting.matplot_dep.models_plots.</code><code class="descname">plot_fit_f</code><span class="sig-paren">(</span><em>model</em>, <em>*args</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/models_plots.html#plot_fit_f"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.models_plots.plot_fit_f" title="Permalink to this definition"></a></dt>
<dd><p>Plot the GP&#8217;s view of the world, where the data is normalized and before applying a likelihood.</p>
<p>All args and kwargs are passed on to models_plots.plot.</p>
</dd></dl>
</div>
<div class="section" id="module-GPy.plotting.matplot_dep.netpbmfile">
<span id="gpy-plotting-matplot-dep-netpbmfile-module"></span><h2>GPy.plotting.matplot_dep.netpbmfile module<a class="headerlink" href="#module-GPy.plotting.matplot_dep.netpbmfile" title="Permalink to this headline"></a></h2>
<p>Read and write image data from respectively to Netpbm files.</p>
<p>This implementation follows the Netpbm format specifications at
<a class="reference external" href="http://netpbm.sourceforge.net/doc/">http://netpbm.sourceforge.net/doc/</a>. No gamma correction is performed.</p>
<p>The following image formats are supported: PBM (bi-level), PGM (grayscale),
PPM (color), PAM (arbitrary), XV thumbnail (RGB332, read-only).</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Author:</th><td class="field-body"><a class="reference external" href="http://www.lfd.uci.edu/~gohlke/">Christoph Gohlke</a></td>
</tr>
<tr class="field-even field"><th class="field-name">Organization:</th><td class="field-body">Laboratory for Fluorescence Dynamics, University of California, Irvine</td>
</tr>
<tr class="field-odd field"><th class="field-name">Version:</th><td class="field-body">2013.01.18</td>
</tr>
</tbody>
</table>
<div class="section" id="requirements">
<h3>Requirements<a class="headerlink" href="#requirements" title="Permalink to this headline"></a></h3>
<ul class="simple">
<li><a class="reference external" href="http://www.python.org">CPython 2.7, 3.2 or 3.3</a></li>
<li><a class="reference external" href="http://www.numpy.org">Numpy 1.7</a></li>
<li><a class="reference external" href="http://www.matplotlib.org">Matplotlib 1.2</a> (optional for plotting)</li>
</ul>
</div>
<div class="section" id="examples">
<h3>Examples<a class="headerlink" href="#examples" title="Permalink to this headline"></a></h3>
<div class="highlight-python"><div class="highlight"><pre><span class="gp">&gt;&gt;&gt; </span><span class="n">im1</span> <span class="o">=</span> <span class="n">numpy</span><span class="o">.</span><span class="n">array</span><span class="p">([[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">],[</span><span class="mi">65534</span><span class="p">,</span> <span class="mi">65535</span><span class="p">]],</span> <span class="n">dtype</span><span class="o">=</span><span class="n">numpy</span><span class="o">.</span><span class="n">uint16</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">imsave</span><span class="p">(</span><span class="s">&#39;_tmp.pgm&#39;</span><span class="p">,</span> <span class="n">im1</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">im2</span> <span class="o">=</span> <span class="n">imread</span><span class="p">(</span><span class="s">&#39;_tmp.pgm&#39;</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="k">assert</span> <span class="n">numpy</span><span class="o">.</span><span class="n">all</span><span class="p">(</span><span class="n">im1</span> <span class="o">==</span> <span class="n">im2</span><span class="p">)</span>
</pre></div>
</div>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.netpbmfile.imread">
<code class="descclassname">GPy.plotting.matplot_dep.netpbmfile.</code><code class="descname">imread</code><span class="sig-paren">(</span><em>filename</em>, <em>*args</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/netpbmfile.html#imread"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.netpbmfile.imread" title="Permalink to this definition"></a></dt>
<dd><p>Return image data from Netpbm file as numpy array.</p>
<p><cite>args</cite> and <cite>kwargs</cite> are arguments to NetpbmFile.asarray().</p>
<div class="highlight-python"><div class="highlight"><pre><span class="gp">&gt;&gt;&gt; </span><span class="n">image</span> <span class="o">=</span> <span class="n">imread</span><span class="p">(</span><span class="s">&#39;_tmp.pgm&#39;</span><span class="p">)</span>
</pre></div>
</div>
</dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.netpbmfile.imsave">
<code class="descclassname">GPy.plotting.matplot_dep.netpbmfile.</code><code class="descname">imsave</code><span class="sig-paren">(</span><em>filename</em>, <em>data</em>, <em>maxval=None</em>, <em>pam=False</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/netpbmfile.html#imsave"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.netpbmfile.imsave" title="Permalink to this definition"></a></dt>
<dd><p>Write image data to Netpbm file.</p>
<div class="highlight-python"><div class="highlight"><pre><span class="gp">&gt;&gt;&gt; </span><span class="n">image</span> <span class="o">=</span> <span class="n">numpy</span><span class="o">.</span><span class="n">array</span><span class="p">([[</span><span class="mi">0</span><span class="p">,</span> <span class="mi">1</span><span class="p">],[</span><span class="mi">65534</span><span class="p">,</span> <span class="mi">65535</span><span class="p">]],</span> <span class="n">dtype</span><span class="o">=</span><span class="n">numpy</span><span class="o">.</span><span class="n">uint16</span><span class="p">)</span>
<span class="gp">&gt;&gt;&gt; </span><span class="n">imsave</span><span class="p">(</span><span class="s">&#39;_tmp.pgm&#39;</span><span class="p">,</span> <span class="n">image</span><span class="p">)</span>
</pre></div>
</div>
</dd></dl>
<dl class="class">
<dt id="GPy.plotting.matplot_dep.netpbmfile.NetpbmFile">
<em class="property">class </em><code class="descclassname">GPy.plotting.matplot_dep.netpbmfile.</code><code class="descname">NetpbmFile</code><span class="sig-paren">(</span><em>arg=None</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/netpbmfile.html#NetpbmFile"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.netpbmfile.NetpbmFile" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal"><span class="pre">object</span></code></p>
<p>Read and write Netpbm PAM, PBM, PGM, PPM, files.</p>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.netpbmfile.NetpbmFile.asarray">
<code class="descname">asarray</code><span class="sig-paren">(</span><em>copy=True</em>, <em>cache=False</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/netpbmfile.html#NetpbmFile.asarray"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.netpbmfile.NetpbmFile.asarray" title="Permalink to this definition"></a></dt>
<dd><p>Return image data from file as numpy array.</p>
</dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.netpbmfile.NetpbmFile.close">
<code class="descname">close</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/netpbmfile.html#NetpbmFile.close"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.netpbmfile.NetpbmFile.close" title="Permalink to this definition"></a></dt>
<dd><p>Close open file. Future asarray calls might fail.</p>
</dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.netpbmfile.NetpbmFile.write">
<code class="descname">write</code><span class="sig-paren">(</span><em>arg</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/netpbmfile.html#NetpbmFile.write"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.netpbmfile.NetpbmFile.write" title="Permalink to this definition"></a></dt>
<dd><p>Write instance to file.</p>
</dd></dl>
</dd></dl>
</div>
</div>
<div class="section" id="module-GPy.plotting.matplot_dep.priors_plots">
<span id="gpy-plotting-matplot-dep-priors-plots-module"></span><h2>GPy.plotting.matplot_dep.priors_plots module<a class="headerlink" href="#module-GPy.plotting.matplot_dep.priors_plots" title="Permalink to this headline"></a></h2>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.priors_plots.plot">
<code class="descclassname">GPy.plotting.matplot_dep.priors_plots.</code><code class="descname">plot</code><span class="sig-paren">(</span><em>prior</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/priors_plots.html#plot"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.priors_plots.plot" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.priors_plots.univariate_plot">
<code class="descclassname">GPy.plotting.matplot_dep.priors_plots.</code><code class="descname">univariate_plot</code><span class="sig-paren">(</span><em>prior</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/priors_plots.html#univariate_plot"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.priors_plots.univariate_plot" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</div>
<div class="section" id="module-GPy.plotting.matplot_dep.ssgplvm">
<span id="gpy-plotting-matplot-dep-ssgplvm-module"></span><h2>GPy.plotting.matplot_dep.ssgplvm module<a class="headerlink" href="#module-GPy.plotting.matplot_dep.ssgplvm" title="Permalink to this headline"></a></h2>
<p>The module plotting results for SSGPLVM</p>
<dl class="class">
<dt id="GPy.plotting.matplot_dep.ssgplvm.SSGPLVM_plot">
<em class="property">class </em><code class="descclassname">GPy.plotting.matplot_dep.ssgplvm.</code><code class="descname">SSGPLVM_plot</code><span class="sig-paren">(</span><em>model</em>, <em>imgsize</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/ssgplvm.html#SSGPLVM_plot"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.ssgplvm.SSGPLVM_plot" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal"><span class="pre">object</span></code></p>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.ssgplvm.SSGPLVM_plot.plot_inducing">
<code class="descname">plot_inducing</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/ssgplvm.html#SSGPLVM_plot.plot_inducing"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.ssgplvm.SSGPLVM_plot.plot_inducing" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</dd></dl>
</div>
<div class="section" id="module-GPy.plotting.matplot_dep.svig_plots">
<span id="gpy-plotting-matplot-dep-svig-plots-module"></span><h2>GPy.plotting.matplot_dep.svig_plots module<a class="headerlink" href="#module-GPy.plotting.matplot_dep.svig_plots" title="Permalink to this headline"></a></h2>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.svig_plots.plot">
<code class="descclassname">GPy.plotting.matplot_dep.svig_plots.</code><code class="descname">plot</code><span class="sig-paren">(</span><em>model</em>, <em>ax=None</em>, <em>fignum=None</em>, <em>Z_height=None</em>, <em>**kwargs</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/svig_plots.html#plot"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.svig_plots.plot" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.svig_plots.plot_traces">
<code class="descclassname">GPy.plotting.matplot_dep.svig_plots.</code><code class="descname">plot_traces</code><span class="sig-paren">(</span><em>model</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/svig_plots.html#plot_traces"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.svig_plots.plot_traces" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</div>
<div class="section" id="module-GPy.plotting.matplot_dep.variational_plots">
<span id="gpy-plotting-matplot-dep-variational-plots-module"></span><h2>GPy.plotting.matplot_dep.variational_plots module<a class="headerlink" href="#module-GPy.plotting.matplot_dep.variational_plots" title="Permalink to this headline"></a></h2>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.variational_plots.plot">
<code class="descclassname">GPy.plotting.matplot_dep.variational_plots.</code><code class="descname">plot</code><span class="sig-paren">(</span><em>parameterized</em>, <em>fignum=None</em>, <em>ax=None</em>, <em>colors=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/variational_plots.html#plot"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.variational_plots.plot" title="Permalink to this definition"></a></dt>
<dd><p>Plot latent space X in 1D:</p>
<blockquote>
<div><ul class="simple">
<li>if fig is given, create input_dim subplots in fig and plot in these</li>
<li>if ax is given plot input_dim 1D latent space plots of X into each <cite>axis</cite></li>
<li>if neither fig nor ax is given create a figure with fignum and plot in there</li>
</ul>
</div></blockquote>
<dl class="docutils">
<dt>colors:</dt>
<dd>colors of different latent space dimensions input_dim</dd>
</dl>
</dd></dl>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.variational_plots.plot_SpikeSlab">
<code class="descclassname">GPy.plotting.matplot_dep.variational_plots.</code><code class="descname">plot_SpikeSlab</code><span class="sig-paren">(</span><em>parameterized</em>, <em>fignum=None</em>, <em>ax=None</em>, <em>colors=None</em>, <em>side_by_side=True</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/variational_plots.html#plot_SpikeSlab"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.variational_plots.plot_SpikeSlab" title="Permalink to this definition"></a></dt>
<dd><p>Plot latent space X in 1D:</p>
<blockquote>
<div><ul class="simple">
<li>if fig is given, create input_dim subplots in fig and plot in these</li>
<li>if ax is given plot input_dim 1D latent space plots of X into each <cite>axis</cite></li>
<li>if neither fig nor ax is given create a figure with fignum and plot in there</li>
</ul>
</div></blockquote>
<dl class="docutils">
<dt>colors:</dt>
<dd>colors of different latent space dimensions input_dim</dd>
</dl>
</dd></dl>
</div>
<div class="section" id="module-GPy.plotting.matplot_dep.visualize">
<span id="gpy-plotting-matplot-dep-visualize-module"></span><h2>GPy.plotting.matplot_dep.visualize module<a class="headerlink" href="#module-GPy.plotting.matplot_dep.visualize" title="Permalink to this headline"></a></h2>
<dl class="function">
<dt id="GPy.plotting.matplot_dep.visualize.data_play">
<code class="descclassname">GPy.plotting.matplot_dep.visualize.</code><code class="descname">data_play</code><span class="sig-paren">(</span><em>Y</em>, <em>visualizer</em>, <em>frame_rate=30</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#data_play"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.data_play" title="Permalink to this definition"></a></dt>
<dd><p>Play a data set using the data_show object given.</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Y:</th><td class="field-body">the data set to be visualized.</td>
</tr>
<tr class="field-even field"><th class="field-name">Parameters:</th><td class="field-body"><strong>visualizer</strong> (<a class="reference internal" href="#GPy.plotting.matplot_dep.visualize.data_show" title="GPy.plotting.matplot_dep.visualize.data_show"><em>data_show</em></a>) &#8211; the data show objectwhether to display during optimisation</td>
</tr>
</tbody>
</table>
<p>Example usage:</p>
<p>This example loads in the CMU mocap database (<a class="reference external" href="http://mocap.cs.cmu.edu">http://mocap.cs.cmu.edu</a>) subject number 35 motion number 01. It then plays it using the mocap_show visualize object.</p>
<div class="highlight-python"><div class="highlight"><pre><span class="n">data</span> <span class="o">=</span> <span class="n">GPy</span><span class="o">.</span><span class="n">util</span><span class="o">.</span><span class="n">datasets</span><span class="o">.</span><span class="n">cmu_mocap</span><span class="p">(</span><span class="n">subject</span><span class="o">=</span><span class="s">&#39;35&#39;</span><span class="p">,</span> <span class="n">train_motions</span><span class="o">=</span><span class="p">[</span><span class="s">&#39;01&#39;</span><span class="p">])</span>
<span class="n">Y</span> <span class="o">=</span> <span class="n">data</span><span class="p">[</span><span class="s">&#39;Y&#39;</span><span class="p">]</span>
<span class="n">Y</span><span class="p">[:,</span> <span class="mi">0</span><span class="p">:</span><span class="mi">3</span><span class="p">]</span> <span class="o">=</span> <span class="mf">0.</span> <span class="c"># Make figure walk in place</span>
<span class="n">visualize</span> <span class="o">=</span> <span class="n">GPy</span><span class="o">.</span><span class="n">util</span><span class="o">.</span><span class="n">visualize</span><span class="o">.</span><span class="n">skeleton_show</span><span class="p">(</span><span class="n">Y</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="p">:],</span> <span class="n">data</span><span class="p">[</span><span class="s">&#39;skel&#39;</span><span class="p">])</span>
<span class="n">GPy</span><span class="o">.</span><span class="n">util</span><span class="o">.</span><span class="n">visualize</span><span class="o">.</span><span class="n">data_play</span><span class="p">(</span><span class="n">Y</span><span class="p">,</span> <span class="n">visualize</span><span class="p">)</span>
</pre></div>
</div>
</dd></dl>
<dl class="class">
<dt id="GPy.plotting.matplot_dep.visualize.data_show">
<em class="property">class </em><code class="descclassname">GPy.plotting.matplot_dep.visualize.</code><code class="descname">data_show</code><span class="sig-paren">(</span><em>vals</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#data_show"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.data_show" title="Permalink to this definition"></a></dt>
<dd><p>The data_show class is a base class which describes how to visualize a
particular data set. For example, motion capture data can be plotted as a
stick figure, or images are shown using imshow. This class enables latent
to data visualizations for the GP-LVM.</p>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.data_show.close">
<code class="descname">close</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#data_show.close"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.data_show.close" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.data_show.modify">
<code class="descname">modify</code><span class="sig-paren">(</span><em>vals</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#data_show.modify"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.data_show.modify" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="GPy.plotting.matplot_dep.visualize.image_show">
<em class="property">class </em><code class="descclassname">GPy.plotting.matplot_dep.visualize.</code><code class="descname">image_show</code><span class="sig-paren">(</span><em>vals</em>, <em>axes=None</em>, <em>dimensions=(16</em>, <em>16)</em>, <em>transpose=False</em>, <em>order='C'</em>, <em>invert=False</em>, <em>scale=False</em>, <em>palette=[]</em>, <em>preset_mean=0.0</em>, <em>preset_std=1.0</em>, <em>select_image=0</em>, <em>cmap=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#image_show"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.image_show" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#GPy.plotting.matplot_dep.visualize.matplotlib_show" title="GPy.plotting.matplot_dep.visualize.matplotlib_show"><code class="xref py py-class docutils literal"><span class="pre">GPy.plotting.matplot_dep.visualize.matplotlib_show</span></code></a></p>
<p>Show a data vector as an image. This visualizer rehapes the output vector and displays it as an image.</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
<li><strong>vals</strong> (<em>axes handle</em>) &#8211; the values of the output to display.</li>
<li><strong>axes</strong> &#8211; the axes to show the output on.</li>
<li><strong>dimensions</strong> (<em>tuple</em>) &#8211; the dimensions that the image needs to be transposed to for display.</li>
<li><strong>transpose</strong> &#8211; whether to transpose the image before display.</li>
<li><strong>order</strong> (<em>string</em>) &#8211; whether array is in Fortan ordering (&#8216;F&#8217;) or Python ordering (&#8216;C&#8217;). Default is python (&#8216;C&#8217;).</li>
<li><strong>invert</strong> (<em>bool</em>) &#8211; whether to invert the pixels or not (default False).</li>
<li><strong>palette</strong> &#8211; a palette to use for the image.</li>
<li><strong>preset_mean</strong> (<em>double</em>) &#8211; the preset mean of a scaled image.</li>
<li><strong>preset_std</strong> (<em>double</em>) &#8211; the preset standard deviation of a scaled image.</li>
<li><strong>cmap</strong> (<em>matplotlib.cm</em>) &#8211; the colormap for image visualization</li>
</ul>
</td>
</tr>
</tbody>
</table>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.image_show.modify">
<code class="descname">modify</code><span class="sig-paren">(</span><em>vals</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#image_show.modify"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.image_show.modify" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.image_show.set_image">
<code class="descname">set_image</code><span class="sig-paren">(</span><em>vals</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#image_show.set_image"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.image_show.set_image" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="GPy.plotting.matplot_dep.visualize.lvm">
<em class="property">class </em><code class="descclassname">GPy.plotting.matplot_dep.visualize.</code><code class="descname">lvm</code><span class="sig-paren">(</span><em>vals, model, data_visualize, latent_axes=None, sense_axes=None, latent_index=[0, 1], disable_drag=False</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#lvm"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.lvm" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#GPy.plotting.matplot_dep.visualize.matplotlib_show" title="GPy.plotting.matplot_dep.visualize.matplotlib_show"><code class="xref py py-class docutils literal"><span class="pre">GPy.plotting.matplot_dep.visualize.matplotlib_show</span></code></a></p>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.lvm.modify">
<code class="descname">modify</code><span class="sig-paren">(</span><em>vals</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#lvm.modify"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.lvm.modify" title="Permalink to this definition"></a></dt>
<dd><p>When latent values are modified update the latent representation and ulso update the output visualization.</p>
</dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.lvm.on_click">
<code class="descname">on_click</code><span class="sig-paren">(</span><em>event</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#lvm.on_click"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.lvm.on_click" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.lvm.on_enter">
<code class="descname">on_enter</code><span class="sig-paren">(</span><em>event</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#lvm.on_enter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.lvm.on_enter" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.lvm.on_leave">
<code class="descname">on_leave</code><span class="sig-paren">(</span><em>event</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#lvm.on_leave"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.lvm.on_leave" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.lvm.on_move">
<code class="descname">on_move</code><span class="sig-paren">(</span><em>event</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#lvm.on_move"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.lvm.on_move" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.lvm.show_sensitivities">
<code class="descname">show_sensitivities</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#lvm.show_sensitivities"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.lvm.show_sensitivities" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="GPy.plotting.matplot_dep.visualize.lvm_dimselect">
<em class="property">class </em><code class="descclassname">GPy.plotting.matplot_dep.visualize.</code><code class="descname">lvm_dimselect</code><span class="sig-paren">(</span><em>vals, model, data_visualize, latent_axes=None, sense_axes=None, latent_index=[0, 1], labels=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#lvm_dimselect"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.lvm_dimselect" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#GPy.plotting.matplot_dep.visualize.lvm" title="GPy.plotting.matplot_dep.visualize.lvm"><code class="xref py py-class docutils literal"><span class="pre">GPy.plotting.matplot_dep.visualize.lvm</span></code></a></p>
<p>A visualizer for latent variable models which allows selection of the latent dimensions to use by clicking on a bar chart of their length scales.</p>
<p>For an example of the visualizer&#8217;s use try:</p>
<p>GPy.examples.dimensionality_reduction.BGPVLM_oil()</p>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.lvm_dimselect.on_click">
<code class="descname">on_click</code><span class="sig-paren">(</span><em>event</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#lvm_dimselect.on_click"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.lvm_dimselect.on_click" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.lvm_dimselect.on_leave">
<code class="descname">on_leave</code><span class="sig-paren">(</span><em>event</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#lvm_dimselect.on_leave"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.lvm_dimselect.on_leave" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="GPy.plotting.matplot_dep.visualize.lvm_subplots">
<em class="property">class </em><code class="descclassname">GPy.plotting.matplot_dep.visualize.</code><code class="descname">lvm_subplots</code><span class="sig-paren">(</span><em>vals</em>, <em>Model</em>, <em>data_visualize</em>, <em>latent_axes=None</em>, <em>sense_axes=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#lvm_subplots"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.lvm_subplots" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#GPy.plotting.matplot_dep.visualize.lvm" title="GPy.plotting.matplot_dep.visualize.lvm"><code class="xref py py-class docutils literal"><span class="pre">GPy.plotting.matplot_dep.visualize.lvm</span></code></a></p>
<p>latent_axes is a np array of dimension np.ceil(input_dim/2),
one for each pair of the latent dimensions.</p>
</dd></dl>
<dl class="class">
<dt id="GPy.plotting.matplot_dep.visualize.matplotlib_show">
<em class="property">class </em><code class="descclassname">GPy.plotting.matplot_dep.visualize.</code><code class="descname">matplotlib_show</code><span class="sig-paren">(</span><em>vals</em>, <em>axes=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#matplotlib_show"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.matplotlib_show" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#GPy.plotting.matplot_dep.visualize.data_show" title="GPy.plotting.matplot_dep.visualize.data_show"><code class="xref py py-class docutils literal"><span class="pre">GPy.plotting.matplot_dep.visualize.data_show</span></code></a></p>
<p>the matplotlib_show class is a base class for all visualization methods that use matplotlib. It is initialized with an axis. If the axis is set to None it creates a figure window.</p>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.matplotlib_show.close">
<code class="descname">close</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#matplotlib_show.close"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.matplotlib_show.close" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="GPy.plotting.matplot_dep.visualize.mocap_data_show">
<em class="property">class </em><code class="descclassname">GPy.plotting.matplot_dep.visualize.</code><code class="descname">mocap_data_show</code><span class="sig-paren">(</span><em>vals</em>, <em>axes=None</em>, <em>connect=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#mocap_data_show"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#GPy.plotting.matplot_dep.visualize.matplotlib_show" title="GPy.plotting.matplot_dep.visualize.matplotlib_show"><code class="xref py py-class docutils literal"><span class="pre">GPy.plotting.matplot_dep.visualize.matplotlib_show</span></code></a></p>
<p>Base class for visualizing motion capture data.</p>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.mocap_data_show.draw_edges">
<code class="descname">draw_edges</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#mocap_data_show.draw_edges"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show.draw_edges" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.mocap_data_show.draw_vertices">
<code class="descname">draw_vertices</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#mocap_data_show.draw_vertices"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show.draw_vertices" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.mocap_data_show.finalize_axes">
<code class="descname">finalize_axes</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#mocap_data_show.finalize_axes"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show.finalize_axes" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.mocap_data_show.finalize_axes_modify">
<code class="descname">finalize_axes_modify</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#mocap_data_show.finalize_axes_modify"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show.finalize_axes_modify" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.mocap_data_show.initialize_axes">
<code class="descname">initialize_axes</code><span class="sig-paren">(</span><em>boundary=0.05</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#mocap_data_show.initialize_axes"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show.initialize_axes" title="Permalink to this definition"></a></dt>
<dd><p>Set up the axes with the right limits and scaling.</p>
</dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.mocap_data_show.initialize_axes_modify">
<code class="descname">initialize_axes_modify</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#mocap_data_show.initialize_axes_modify"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show.initialize_axes_modify" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.mocap_data_show.modify">
<code class="descname">modify</code><span class="sig-paren">(</span><em>vals</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#mocap_data_show.modify"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show.modify" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.mocap_data_show.process_values">
<code class="descname">process_values</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#mocap_data_show.process_values"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show.process_values" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="GPy.plotting.matplot_dep.visualize.mocap_data_show_vpython">
<em class="property">class </em><code class="descclassname">GPy.plotting.matplot_dep.visualize.</code><code class="descname">mocap_data_show_vpython</code><span class="sig-paren">(</span><em>vals</em>, <em>scene=None</em>, <em>connect=None</em>, <em>radius=0.1</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#mocap_data_show_vpython"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show_vpython" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#GPy.plotting.matplot_dep.visualize.vpython_show" title="GPy.plotting.matplot_dep.visualize.vpython_show"><code class="xref py py-class docutils literal"><span class="pre">GPy.plotting.matplot_dep.visualize.vpython_show</span></code></a></p>
<p>Base class for visualizing motion capture data using visual module.</p>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.mocap_data_show_vpython.draw_edges">
<code class="descname">draw_edges</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#mocap_data_show_vpython.draw_edges"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show_vpython.draw_edges" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.mocap_data_show_vpython.draw_vertices">
<code class="descname">draw_vertices</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#mocap_data_show_vpython.draw_vertices"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show_vpython.draw_vertices" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.mocap_data_show_vpython.modify">
<code class="descname">modify</code><span class="sig-paren">(</span><em>vals</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#mocap_data_show_vpython.modify"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show_vpython.modify" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.mocap_data_show_vpython.modify_edges">
<code class="descname">modify_edges</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#mocap_data_show_vpython.modify_edges"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show_vpython.modify_edges" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.mocap_data_show_vpython.modify_vertices">
<code class="descname">modify_vertices</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#mocap_data_show_vpython.modify_vertices"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show_vpython.modify_vertices" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.mocap_data_show_vpython.pos_axis">
<code class="descname">pos_axis</code><span class="sig-paren">(</span><em>i</em>, <em>j</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#mocap_data_show_vpython.pos_axis"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show_vpython.pos_axis" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.mocap_data_show_vpython.process_values">
<code class="descname">process_values</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#mocap_data_show_vpython.process_values"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show_vpython.process_values" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="GPy.plotting.matplot_dep.visualize.skeleton_show">
<em class="property">class </em><code class="descclassname">GPy.plotting.matplot_dep.visualize.</code><code class="descname">skeleton_show</code><span class="sig-paren">(</span><em>vals</em>, <em>skel</em>, <em>axes=None</em>, <em>padding=0</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#skeleton_show"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.skeleton_show" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show" title="GPy.plotting.matplot_dep.visualize.mocap_data_show"><code class="xref py py-class docutils literal"><span class="pre">GPy.plotting.matplot_dep.visualize.mocap_data_show</span></code></a></p>
<p>data_show class for visualizing motion capture data encoded as a skeleton with angles.</p>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.skeleton_show.process_values">
<code class="descname">process_values</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#skeleton_show.process_values"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.skeleton_show.process_values" title="Permalink to this definition"></a></dt>
<dd><p>Takes a set of angles and converts them to the x,y,z coordinates in the internal prepresentation of the class, ready for plotting.</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>vals</strong> &#8211; the values that are being modelled.</td>
</tr>
</tbody>
</table>
</dd></dl>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.skeleton_show.wrap_around">
<code class="descname">wrap_around</code><span class="sig-paren">(</span><em>lim</em>, <em>connect</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#skeleton_show.wrap_around"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.skeleton_show.wrap_around" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="GPy.plotting.matplot_dep.visualize.stick_show">
<em class="property">class </em><code class="descclassname">GPy.plotting.matplot_dep.visualize.</code><code class="descname">stick_show</code><span class="sig-paren">(</span><em>vals</em>, <em>connect=None</em>, <em>axes=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#stick_show"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.stick_show" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#GPy.plotting.matplot_dep.visualize.mocap_data_show" title="GPy.plotting.matplot_dep.visualize.mocap_data_show"><code class="xref py py-class docutils literal"><span class="pre">GPy.plotting.matplot_dep.visualize.mocap_data_show</span></code></a></p>
<p>Show a three dimensional point cloud as a figure. Connect elements of the figure together using the matrix connect.</p>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.stick_show.process_values">
<code class="descname">process_values</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#stick_show.process_values"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.stick_show.process_values" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="GPy.plotting.matplot_dep.visualize.vector_show">
<em class="property">class </em><code class="descclassname">GPy.plotting.matplot_dep.visualize.</code><code class="descname">vector_show</code><span class="sig-paren">(</span><em>vals</em>, <em>axes=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#vector_show"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.vector_show" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#GPy.plotting.matplot_dep.visualize.matplotlib_show" title="GPy.plotting.matplot_dep.visualize.matplotlib_show"><code class="xref py py-class docutils literal"><span class="pre">GPy.plotting.matplot_dep.visualize.matplotlib_show</span></code></a></p>
<p>A base visualization class that just shows a data vector as a plot of
vector elements alongside their indices.</p>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.vector_show.modify">
<code class="descname">modify</code><span class="sig-paren">(</span><em>vals</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#vector_show.modify"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.vector_show.modify" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="GPy.plotting.matplot_dep.visualize.vpython_show">
<em class="property">class </em><code class="descclassname">GPy.plotting.matplot_dep.visualize.</code><code class="descname">vpython_show</code><span class="sig-paren">(</span><em>vals</em>, <em>scene=None</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#vpython_show"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.vpython_show" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#GPy.plotting.matplot_dep.visualize.data_show" title="GPy.plotting.matplot_dep.visualize.data_show"><code class="xref py py-class docutils literal"><span class="pre">GPy.plotting.matplot_dep.visualize.data_show</span></code></a></p>
<p>the vpython_show class is a base class for all visualization methods that use vpython to display. It is initialized with a scene. If the scene is set to None it creates a scene window.</p>
<dl class="method">
<dt id="GPy.plotting.matplot_dep.visualize.vpython_show.close">
<code class="descname">close</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/plotting/matplot_dep/visualize.html#vpython_show.close"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.plotting.matplot_dep.visualize.vpython_show.close" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</dd></dl>
</div>
<div class="section" id="module-GPy.plotting.matplot_dep">
<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-GPy.plotting.matplot_dep" title="Permalink to this headline"></a></h2>
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<h3><a href="index.html">Table Of Contents</a></h3>
<ul>
<li><a class="reference internal" href="#">GPy.plotting.matplot_dep package</a><ul>
<li><a class="reference internal" href="#subpackages">Subpackages</a></li>
<li><a class="reference internal" href="#submodules">Submodules</a></li>
<li><a class="reference internal" href="#module-GPy.plotting.matplot_dep.Tango">GPy.plotting.matplot_dep.Tango module</a></li>
<li><a class="reference internal" href="#module-GPy.plotting.matplot_dep.base_plots">GPy.plotting.matplot_dep.base_plots module</a></li>
<li><a class="reference internal" href="#module-GPy.plotting.matplot_dep.dim_reduction_plots">GPy.plotting.matplot_dep.dim_reduction_plots module</a></li>
<li><a class="reference internal" href="#module-GPy.plotting.matplot_dep.img_plots">GPy.plotting.matplot_dep.img_plots module</a></li>
<li><a class="reference internal" href="#module-GPy.plotting.matplot_dep.inference_plots">GPy.plotting.matplot_dep.inference_plots module</a></li>
<li><a class="reference internal" href="#module-GPy.plotting.matplot_dep.kernel_plots">GPy.plotting.matplot_dep.kernel_plots module</a></li>
<li><a class="reference internal" href="#module-GPy.plotting.matplot_dep.mapping_plots">GPy.plotting.matplot_dep.mapping_plots module</a></li>
<li><a class="reference internal" href="#module-GPy.plotting.matplot_dep.maps">GPy.plotting.matplot_dep.maps module</a></li>
<li><a class="reference internal" href="#module-GPy.plotting.matplot_dep.models_plots">GPy.plotting.matplot_dep.models_plots module</a></li>
<li><a class="reference internal" href="#module-GPy.plotting.matplot_dep.netpbmfile">GPy.plotting.matplot_dep.netpbmfile module</a><ul>
<li><a class="reference internal" href="#requirements">Requirements</a></li>
<li><a class="reference internal" href="#examples">Examples</a></li>
</ul>
</li>
<li><a class="reference internal" href="#module-GPy.plotting.matplot_dep.priors_plots">GPy.plotting.matplot_dep.priors_plots module</a></li>
<li><a class="reference internal" href="#module-GPy.plotting.matplot_dep.ssgplvm">GPy.plotting.matplot_dep.ssgplvm module</a></li>
<li><a class="reference internal" href="#module-GPy.plotting.matplot_dep.svig_plots">GPy.plotting.matplot_dep.svig_plots module</a></li>
<li><a class="reference internal" href="#module-GPy.plotting.matplot_dep.variational_plots">GPy.plotting.matplot_dep.variational_plots module</a></li>
<li><a class="reference internal" href="#module-GPy.plotting.matplot_dep.visualize">GPy.plotting.matplot_dep.visualize module</a></li>
<li><a class="reference internal" href="#module-GPy.plotting.matplot_dep">Module contents</a></li>
</ul>
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