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update kernel tutorial
2015-07-19 14:30:27 -07:00
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<div class="section" id="gpy-kern-src-psi-comp-package">
<h1>GPy.kern._src.psi_comp package<a class="headerlink" href="#gpy-kern-src-psi-comp-package" title="Permalink to this headline"></a></h1>
<div class="section" id="submodules">
<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this headline"></a></h2>
</div>
<div class="section" id="module-GPy.kern._src.psi_comp.linear_psi_comp">
<span id="gpy-kern-src-psi-comp-linear-psi-comp-module"></span><h2>GPy.kern._src.psi_comp.linear_psi_comp module<a class="headerlink" href="#module-GPy.kern._src.psi_comp.linear_psi_comp" title="Permalink to this headline"></a></h2>
<p>The package for the Psi statistics computation of the linear kernel for Bayesian GPLVM</p>
<dl class="function">
<dt id="GPy.kern._src.psi_comp.linear_psi_comp.psiDerivativecomputations">
<code class="descclassname">GPy.kern._src.psi_comp.linear_psi_comp.</code><code class="descname">psiDerivativecomputations</code><span class="sig-paren">(</span><em>dL_dpsi0</em>, <em>dL_dpsi1</em>, <em>dL_dpsi2</em>, <em>variance</em>, <em>Z</em>, <em>variational_posterior</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/kern/_src/psi_comp/linear_psi_comp.html#psiDerivativecomputations"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.kern._src.psi_comp.linear_psi_comp.psiDerivativecomputations" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.kern._src.psi_comp.linear_psi_comp.psicomputations">
<code class="descclassname">GPy.kern._src.psi_comp.linear_psi_comp.</code><code class="descname">psicomputations</code><span class="sig-paren">(</span><em>variance</em>, <em>Z</em>, <em>variational_posterior</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/kern/_src/psi_comp/linear_psi_comp.html#psicomputations"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.kern._src.psi_comp.linear_psi_comp.psicomputations" title="Permalink to this definition"></a></dt>
<dd><p>Compute psi-statistics for ss-linear kernel</p>
</dd></dl>
</div>
<div class="section" id="module-GPy.kern._src.psi_comp.rbf_psi_comp">
<span id="gpy-kern-src-psi-comp-rbf-psi-comp-module"></span><h2>GPy.kern._src.psi_comp.rbf_psi_comp module<a class="headerlink" href="#module-GPy.kern._src.psi_comp.rbf_psi_comp" title="Permalink to this headline"></a></h2>
<p>The module for psi-statistics for RBF kernel</p>
<dl class="function">
<dt id="GPy.kern._src.psi_comp.rbf_psi_comp.psiDerivativecomputations">
<code class="descclassname">GPy.kern._src.psi_comp.rbf_psi_comp.</code><code class="descname">psiDerivativecomputations</code><span class="sig-paren">(</span><em>dL_dpsi0</em>, <em>dL_dpsi1</em>, <em>dL_dpsi2</em>, <em>variance</em>, <em>lengthscale</em>, <em>Z</em>, <em>variational_posterior</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/kern/_src/psi_comp/rbf_psi_comp.html#psiDerivativecomputations"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.kern._src.psi_comp.rbf_psi_comp.psiDerivativecomputations" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.kern._src.psi_comp.rbf_psi_comp.psicomputations">
<code class="descclassname">GPy.kern._src.psi_comp.rbf_psi_comp.</code><code class="descname">psicomputations</code><span class="sig-paren">(</span><em>variance</em>, <em>lengthscale</em>, <em>Z</em>, <em>variational_posterior</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/kern/_src/psi_comp/rbf_psi_comp.html#psicomputations"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.kern._src.psi_comp.rbf_psi_comp.psicomputations" title="Permalink to this definition"></a></dt>
<dd><p>Z - MxQ
mu - NxQ
S - NxQ
gamma - NxQ</p>
</dd></dl>
</div>
<div class="section" id="module-GPy.kern._src.psi_comp.rbf_psi_gpucomp">
<span id="gpy-kern-src-psi-comp-rbf-psi-gpucomp-module"></span><h2>GPy.kern._src.psi_comp.rbf_psi_gpucomp module<a class="headerlink" href="#module-GPy.kern._src.psi_comp.rbf_psi_gpucomp" title="Permalink to this headline"></a></h2>
<p>The module for psi-statistics for RBF kernel</p>
<dl class="class">
<dt id="GPy.kern._src.psi_comp.rbf_psi_gpucomp.PSICOMP_RBF_GPU">
<em class="property">class </em><code class="descclassname">GPy.kern._src.psi_comp.rbf_psi_gpucomp.</code><code class="descname">PSICOMP_RBF_GPU</code><span class="sig-paren">(</span><em>threadnum=128</em>, <em>blocknum=15</em>, <em>GPU_direct=False</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/kern/_src/psi_comp/rbf_psi_gpucomp.html#PSICOMP_RBF_GPU"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.kern._src.psi_comp.rbf_psi_gpucomp.PSICOMP_RBF_GPU" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#GPy.kern._src.psi_comp.PSICOMP_RBF" title="GPy.kern._src.psi_comp.PSICOMP_RBF"><code class="xref py py-class docutils literal"><span class="pre">GPy.kern._src.psi_comp.PSICOMP_RBF</span></code></a></p>
<dl class="method">
<dt id="GPy.kern._src.psi_comp.rbf_psi_gpucomp.PSICOMP_RBF_GPU.get_dimensions">
<code class="descname">get_dimensions</code><span class="sig-paren">(</span><em>Z</em>, <em>variational_posterior</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/kern/_src/psi_comp/rbf_psi_gpucomp.html#PSICOMP_RBF_GPU.get_dimensions"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.kern._src.psi_comp.rbf_psi_gpucomp.PSICOMP_RBF_GPU.get_dimensions" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="attribute">
<dt id="GPy.kern._src.psi_comp.rbf_psi_gpucomp.PSICOMP_RBF_GPU.psiDerivativecomputations">
<code class="descname">psiDerivativecomputations</code><em class="property"> = &lt;functools.partial object&gt;</em><a class="headerlink" href="#GPy.kern._src.psi_comp.rbf_psi_gpucomp.PSICOMP_RBF_GPU.psiDerivativecomputations" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="attribute">
<dt id="GPy.kern._src.psi_comp.rbf_psi_gpucomp.PSICOMP_RBF_GPU.psicomputations">
<code class="descname">psicomputations</code><em class="property"> = &lt;functools.partial object&gt;</em><a class="headerlink" href="#GPy.kern._src.psi_comp.rbf_psi_gpucomp.PSICOMP_RBF_GPU.psicomputations" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.kern._src.psi_comp.rbf_psi_gpucomp.PSICOMP_RBF_GPU.reset_derivative">
<code class="descname">reset_derivative</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/kern/_src/psi_comp/rbf_psi_gpucomp.html#PSICOMP_RBF_GPU.reset_derivative"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.kern._src.psi_comp.rbf_psi_gpucomp.PSICOMP_RBF_GPU.reset_derivative" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.kern._src.psi_comp.rbf_psi_gpucomp.PSICOMP_RBF_GPU.sync_params">
<code class="descname">sync_params</code><span class="sig-paren">(</span><em>lengthscale</em>, <em>Z</em>, <em>mu</em>, <em>S</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/kern/_src/psi_comp/rbf_psi_gpucomp.html#PSICOMP_RBF_GPU.sync_params"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.kern._src.psi_comp.rbf_psi_gpucomp.PSICOMP_RBF_GPU.sync_params" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</dd></dl>
</div>
<div class="section" id="module-GPy.kern._src.psi_comp.sslinear_psi_comp">
<span id="gpy-kern-src-psi-comp-sslinear-psi-comp-module"></span><h2>GPy.kern._src.psi_comp.sslinear_psi_comp module<a class="headerlink" href="#module-GPy.kern._src.psi_comp.sslinear_psi_comp" title="Permalink to this headline"></a></h2>
<p>The package for the Psi statistics computation of the linear kernel for SSGPLVM</p>
<dl class="function">
<dt id="GPy.kern._src.psi_comp.sslinear_psi_comp.psiDerivativecomputations">
<code class="descclassname">GPy.kern._src.psi_comp.sslinear_psi_comp.</code><code class="descname">psiDerivativecomputations</code><span class="sig-paren">(</span><em>dL_dpsi0</em>, <em>dL_dpsi1</em>, <em>dL_dpsi2</em>, <em>variance</em>, <em>Z</em>, <em>variational_posterior</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/kern/_src/psi_comp/sslinear_psi_comp.html#psiDerivativecomputations"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.kern._src.psi_comp.sslinear_psi_comp.psiDerivativecomputations" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="function">
<dt id="GPy.kern._src.psi_comp.sslinear_psi_comp.psicomputations">
<code class="descclassname">GPy.kern._src.psi_comp.sslinear_psi_comp.</code><code class="descname">psicomputations</code><span class="sig-paren">(</span><em>variance</em>, <em>Z</em>, <em>variational_posterior</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/kern/_src/psi_comp/sslinear_psi_comp.html#psicomputations"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.kern._src.psi_comp.sslinear_psi_comp.psicomputations" title="Permalink to this definition"></a></dt>
<dd><p>Compute psi-statistics for ss-linear kernel</p>
</dd></dl>
</div>
<div class="section" id="module-GPy.kern._src.psi_comp.ssrbf_psi_comp">
<span id="gpy-kern-src-psi-comp-ssrbf-psi-comp-module"></span><h2>GPy.kern._src.psi_comp.ssrbf_psi_comp module<a class="headerlink" href="#module-GPy.kern._src.psi_comp.ssrbf_psi_comp" title="Permalink to this headline"></a></h2>
<p>The package for the psi statistics computation</p>
<dl class="function">
<dt id="GPy.kern._src.psi_comp.ssrbf_psi_comp.psiDerivativecomputations">
<code class="descclassname">GPy.kern._src.psi_comp.ssrbf_psi_comp.</code><code class="descname">psiDerivativecomputations</code><span class="sig-paren">(</span><em>dL_dpsi0</em>, <em>dL_dpsi1</em>, <em>dL_dpsi2</em>, <em>variance</em>, <em>lengthscale</em>, <em>Z</em>, <em>variational_posterior</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/kern/_src/psi_comp/ssrbf_psi_comp.html#psiDerivativecomputations"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.kern._src.psi_comp.ssrbf_psi_comp.psiDerivativecomputations" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</div>
<div class="section" id="module-GPy.kern._src.psi_comp.ssrbf_psi_gpucomp">
<span id="gpy-kern-src-psi-comp-ssrbf-psi-gpucomp-module"></span><h2>GPy.kern._src.psi_comp.ssrbf_psi_gpucomp module<a class="headerlink" href="#module-GPy.kern._src.psi_comp.ssrbf_psi_gpucomp" title="Permalink to this headline"></a></h2>
<p>The module for psi-statistics for RBF kernel for Spike-and-Slab GPLVM</p>
<dl class="class">
<dt id="GPy.kern._src.psi_comp.ssrbf_psi_gpucomp.PSICOMP_SSRBF_GPU">
<em class="property">class </em><code class="descclassname">GPy.kern._src.psi_comp.ssrbf_psi_gpucomp.</code><code class="descname">PSICOMP_SSRBF_GPU</code><span class="sig-paren">(</span><em>threadnum=128</em>, <em>blocknum=15</em>, <em>GPU_direct=False</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/kern/_src/psi_comp/ssrbf_psi_gpucomp.html#PSICOMP_SSRBF_GPU"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.kern._src.psi_comp.ssrbf_psi_gpucomp.PSICOMP_SSRBF_GPU" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#GPy.kern._src.psi_comp.PSICOMP_RBF" title="GPy.kern._src.psi_comp.PSICOMP_RBF"><code class="xref py py-class docutils literal"><span class="pre">GPy.kern._src.psi_comp.PSICOMP_RBF</span></code></a></p>
<dl class="method">
<dt id="GPy.kern._src.psi_comp.ssrbf_psi_gpucomp.PSICOMP_SSRBF_GPU.get_dimensions">
<code class="descname">get_dimensions</code><span class="sig-paren">(</span><em>Z</em>, <em>variational_posterior</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/kern/_src/psi_comp/ssrbf_psi_gpucomp.html#PSICOMP_SSRBF_GPU.get_dimensions"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.kern._src.psi_comp.ssrbf_psi_gpucomp.PSICOMP_SSRBF_GPU.get_dimensions" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="attribute">
<dt id="GPy.kern._src.psi_comp.ssrbf_psi_gpucomp.PSICOMP_SSRBF_GPU.psiDerivativecomputations">
<code class="descname">psiDerivativecomputations</code><em class="property"> = &lt;functools.partial object&gt;</em><a class="headerlink" href="#GPy.kern._src.psi_comp.ssrbf_psi_gpucomp.PSICOMP_SSRBF_GPU.psiDerivativecomputations" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="attribute">
<dt id="GPy.kern._src.psi_comp.ssrbf_psi_gpucomp.PSICOMP_SSRBF_GPU.psicomputations">
<code class="descname">psicomputations</code><em class="property"> = &lt;functools.partial object&gt;</em><a class="headerlink" href="#GPy.kern._src.psi_comp.ssrbf_psi_gpucomp.PSICOMP_SSRBF_GPU.psicomputations" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.kern._src.psi_comp.ssrbf_psi_gpucomp.PSICOMP_SSRBF_GPU.reset_derivative">
<code class="descname">reset_derivative</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/kern/_src/psi_comp/ssrbf_psi_gpucomp.html#PSICOMP_SSRBF_GPU.reset_derivative"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.kern._src.psi_comp.ssrbf_psi_gpucomp.PSICOMP_SSRBF_GPU.reset_derivative" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="GPy.kern._src.psi_comp.ssrbf_psi_gpucomp.PSICOMP_SSRBF_GPU.sync_params">
<code class="descname">sync_params</code><span class="sig-paren">(</span><em>lengthscale</em>, <em>Z</em>, <em>mu</em>, <em>S</em>, <em>gamma</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/kern/_src/psi_comp/ssrbf_psi_gpucomp.html#PSICOMP_SSRBF_GPU.sync_params"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.kern._src.psi_comp.ssrbf_psi_gpucomp.PSICOMP_SSRBF_GPU.sync_params" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</dd></dl>
</div>
<div class="section" id="module-GPy.kern._src.psi_comp">
<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-GPy.kern._src.psi_comp" title="Permalink to this headline"></a></h2>
<dl class="class">
<dt id="GPy.kern._src.psi_comp.PSICOMP_Linear">
<em class="property">class </em><code class="descclassname">GPy.kern._src.psi_comp.</code><code class="descname">PSICOMP_Linear</code><span class="sig-paren">(</span><em>*a</em>, <em>**kw</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/kern/_src/psi_comp.html#PSICOMP_Linear"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.kern._src.psi_comp.PSICOMP_Linear" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="GPy.core.parameterization.html#GPy.core.parameterization.parameter_core.Pickleable" title="GPy.core.parameterization.parameter_core.Pickleable"><code class="xref py py-class docutils literal"><span class="pre">GPy.core.parameterization.parameter_core.Pickleable</span></code></a></p>
<dl class="attribute">
<dt id="GPy.kern._src.psi_comp.PSICOMP_Linear.psiDerivativecomputations">
<code class="descname">psiDerivativecomputations</code><em class="property"> = &lt;functools.partial object&gt;</em><a class="headerlink" href="#GPy.kern._src.psi_comp.PSICOMP_Linear.psiDerivativecomputations" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="attribute">
<dt id="GPy.kern._src.psi_comp.PSICOMP_Linear.psicomputations">
<code class="descname">psicomputations</code><em class="property"> = &lt;functools.partial object&gt;</em><a class="headerlink" href="#GPy.kern._src.psi_comp.PSICOMP_Linear.psicomputations" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="GPy.kern._src.psi_comp.PSICOMP_RBF">
<em class="property">class </em><code class="descclassname">GPy.kern._src.psi_comp.</code><code class="descname">PSICOMP_RBF</code><span class="sig-paren">(</span><em>*a</em>, <em>**kw</em><span class="sig-paren">)</span><a class="reference internal" href="_modules/GPy/kern/_src/psi_comp.html#PSICOMP_RBF"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GPy.kern._src.psi_comp.PSICOMP_RBF" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="GPy.core.parameterization.html#GPy.core.parameterization.parameter_core.Pickleable" title="GPy.core.parameterization.parameter_core.Pickleable"><code class="xref py py-class docutils literal"><span class="pre">GPy.core.parameterization.parameter_core.Pickleable</span></code></a></p>
<dl class="attribute">
<dt id="GPy.kern._src.psi_comp.PSICOMP_RBF.psiDerivativecomputations">
<code class="descname">psiDerivativecomputations</code><em class="property"> = &lt;functools.partial object&gt;</em><a class="headerlink" href="#GPy.kern._src.psi_comp.PSICOMP_RBF.psiDerivativecomputations" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="attribute">
<dt id="GPy.kern._src.psi_comp.PSICOMP_RBF.psicomputations">
<code class="descname">psicomputations</code><em class="property"> = &lt;functools.partial object&gt;</em><a class="headerlink" href="#GPy.kern._src.psi_comp.PSICOMP_RBF.psicomputations" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
</dd></dl>
</div>
</div>
</div>
</div>
</div>
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<h3><a href="index.html">Table Of Contents</a></h3>
<ul>
<li><a class="reference internal" href="#">GPy.kern._src.psi_comp package</a><ul>
<li><a class="reference internal" href="#submodules">Submodules</a></li>
<li><a class="reference internal" href="#module-GPy.kern._src.psi_comp.linear_psi_comp">GPy.kern._src.psi_comp.linear_psi_comp module</a></li>
<li><a class="reference internal" href="#module-GPy.kern._src.psi_comp.rbf_psi_comp">GPy.kern._src.psi_comp.rbf_psi_comp module</a></li>
<li><a class="reference internal" href="#module-GPy.kern._src.psi_comp.rbf_psi_gpucomp">GPy.kern._src.psi_comp.rbf_psi_gpucomp module</a></li>
<li><a class="reference internal" href="#module-GPy.kern._src.psi_comp.sslinear_psi_comp">GPy.kern._src.psi_comp.sslinear_psi_comp module</a></li>
<li><a class="reference internal" href="#module-GPy.kern._src.psi_comp.ssrbf_psi_comp">GPy.kern._src.psi_comp.ssrbf_psi_comp module</a></li>
<li><a class="reference internal" href="#module-GPy.kern._src.psi_comp.ssrbf_psi_gpucomp">GPy.kern._src.psi_comp.ssrbf_psi_gpucomp module</a></li>
<li><a class="reference internal" href="#module-GPy.kern._src.psi_comp">Module contents</a></li>
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